Course manual 2020/2021

Course content

Whether you continue your career in scientific research or in any other field (business, politics, communication, teaching, entrepreneurship), you will continuously come into contact with new scientific discoveries. In this day and age, many of those are related to various aspects of developmental biology (think about aging research and regenerative medicine, for instance). Having been trained as a scientist, you will be expected to be able to critically evaluate the claims that you hear or read in the news. For this, it is crucial that you are able to go beyond the tweet, newspaper article or blogpost and back to the original source: the scientific publication. 

Students will get the opportunity to broadly sample the recent (i.e. mostly published in the last 2 years) developmental biology literature. Papers will be discussed in a 'journal club' style setting. Class size will intentionally be kept small, to stimulate and interactive exchanges of ideas and opinions.

Study materials

Syllabus

  • Hand-outs and papers, posted on Canvas + Links provided via Google Docs

Objectives

  • discuss current concepts and challenges in developmental biology research and the state-of-the-art experimental approaches used to tackle these.
  • analyze and interpret the primary literature.
  • concisely present a paper in front of a peer group.
  • discuss and critique a paper within a peer group.
  • dissect the strength and weaknesses of a primary research article.

Teaching methods

  • Self-study
  • Supervision/feedback meeting
  • journal club

Weekly group sessions ('journal club' style) under the guidance of dr. Renée van Amerongen and dr. Frank Jacobs. At least one guest speaker will be invited whose paper will be discussed in class.

Students are expected to show up to class prepared, having read the paper to be discussed and to actively take part in the in class discussions.

Learning activities

Activity

Number of hours

Journal Club

30

Zelfstudie

132

Total 6 EC x 28 hours

168

Attendance

Requirements of the programme concerning attendance (OER-B):

  1. Attendance during practical components exercises is mandatory.

Additional requirements for this course:

Students can miss one class without any repercussions, but they do need to communicate this in advance with the course coordinators. Students are expected to show up prepared and to actively participate in the in class discussions. The setting is optimal for an interactive exchange of ideas and offers a safe environment to practice and improve scientific discussion skills. 

Assessment

Item and weight Details

Final grade

The final grade will be calculated based on the in class participation (active participation in discussion: 30%, presentation(s) 15%), quality of the questions submitted prior to each class (15%), and written assignments (20% "News and Views", 20% critical review report). 

Note that we are frequently facing last minute drop outs/changes in final student numbers signed up for this course, which means that we will have to tweak details on presentations and assignments based on the group size. This may include changing from individual to group writing assignments and/or changing the order of the guest lecture around.

Please also not that with the introduction of an 'onderwijsvrije week' in period 5, fewer meetings have been scheduled than in previous years. 

Inspection of assessed work

Contact the course coordinator to make an appointment for inspection.

Assignments

Critique of paper

  • You will write a short critique of the paper that you discussed during the class. This critique should be a synthesis of the in-class discussion and your own opinion of the paper. It should thus incorporate the points that were brought up during class, so make sure to collect these/write them down on ‘your’ evening!

    (critical review report, 20%)

News & Views style

  • Follow the format of a Nature style News and Views article

    (20%)

Questions about paper

  • Submit these via Canvas assignments

    (15%)

Presentation assigned paper(s)

  • Presentation of journal club article, knowledge of technical detail,  critical notes
    (15%)

Active participation

  • Speaking up, raising points, formulating questions and/or criticism, participation in a scientific discussion

    (30%)

Details on the grading and % of the final grade will be made available via Canvas.

Fraud and plagiarism

The 'Regulations governing fraud and plagiarism for UvA students' applies to this course. This will be monitored carefully. Upon suspicion of fraud or plagiarism the Examinations Board of the programme will be informed. For the 'Regulations governing fraud and plagiarism for UvA students' see: www.student.uva.nl

Course structure

Week 1

Introduction

Week 2

Self study (at home)

Week 3

Guest lecture

Week 4-11

In class journal club discussions

Week 12

Writing/Assignment preparation

 

Note that we are frequently facing last minute drop outs/changes in final student numbers signed up for this course, which means that we will have to tweak details on presentations and assignments based on the group size. This may include changing from individual to group writing assignments and/or changing the order of the guest lecture around.

Please also not that with the introduction of an 'onderwijsvrije week' in period 5, fewer meetings have been scheduled than in previous years. 

Timetable

The schedule for this course is published on DataNose.

Additional information

 

Last minute changes will be communicated by e-mail via Canvas.

Prior to/At the start of the course all students will receive a PDF file with the course syllabus, which contains all of the details about the course.

 

Contact information

Coordinator

  • dr. R. van Amerongen

Co-coordinator

  • dr. F.M.J. Jacobs

Staff

  • dr. F.M.J. Jacobs