Experimental Oncology

6 EC

Semester 1, period 1

5234EXPO6Y

Owner Master Biomedical Sciences
Coordinator R.L. Beijersbergen PhD
Part of Master Biomedical Sciences, track Oncology,

Course manual 2020/2021

Course content

The master course experimental oncology deals with the main themes of basic cancer research and treatment, the implications of groundbreaking new research for diagnosis and treatment of cancer, and the clinical implementation. Teachers are fundamental researchers and clinicians involved in the development and implementation of state-of-the-art cancer therapies. Topics include e.g. molecular cancer diagnostics, the hallmarks of cancer, mechanisms of drug resistance, immunotherapy of cancer. The course evolves around four major themes; hormone regulated cancers, DNA damage and genomic instability, targeted therapy and resistance and immunology and immunotherapy. Lectures covering different fields of research and treatment provide background and reference.  The different topics will be dealt with in lectures and tutorials, with assignments (paper presentation and grant proposal) and group discussions of recent literature related to the thematic blocks.

Recommended  prior knowledge

Solid, advanced knowledge in the areas of cell biology and genetics (eg. courses Celbiologie (6 EC), Moleculaire Biologie/Biochemie (T) (6 EC), Anatomie en Ontwikkelingsbiologie (12 EC), Medische Biochemie en Pathofysiologie (12 EC)).

Study materials

Literature

  • The biology of cancer by R.A. Weinberg (2nd edition). 

Syllabus

  • electronic copies of Handouts

Objectives

  • Aim of the course Experimental Oncology is to provide insight into the molecular basis of normal and tumor cell behaviour 
  • to provide insight into the development of new methods for cancer diagnosis and therapy.

Teaching methods

  • Lecture
  • Seminar
  • Presentation/symposium
  • Self-study
  • Fieldwork/excursion
  • wiring a research proposal

Lectures provide the general background and introduction in the different subjects of the four thematic blocks. It also introduces the latest developments and insights in the respective research area

Seminars are state-of-the-art lectures given by experts in the respective research filed. They are part of the thematic blocks and present their ongoing research projects and recent findings.

An excursion to the radiology department is part of the course to see the daily practice of cancer treatment and patient care in the clinic.

The students have to present a research paper as part of the thematic blocks. They have to discuss the implications, shortcomings and future research lines for these studies. The student prepare questions to enable a discussion with the speakers and among the students

The students have to study the subjects of the course to prepare for four exams, one for each thematic block. The lectures provide background for the state-of-the-art lectures/seminars which are also part of the exams.

Each student has to independently write a research proposal on a topic of one of the thematic blocks during the course. They will have to define the research question and its relevance, generate a hypothesis, discuss the experimental approach to test the hypothesis and discuss the potential outcome. 

 

 

Learning activities

Activity

Number of hours

Lectures 51
Seminars 8
exams 4
preparation 18
presentations 12
Self Study 75
 Totaal 6 EC 8 28 h 168

 

Attendance

The programme does not have requirements concerning attendance (OER-B).

Additional requirements for this course:

Attendance at lectures and seminars is highly recommended.

Assessment

Item and weight Details

Final grade

Each thematic block is followed by an exam about the specific subject including the background lectures. Each exam consists of 4 questions with each 3 to 4 parts. There is no minimum grade for each of the exams. Together they make up 50% of the final grade.

The student present a research paper in the context of an thematic block. The students present in couples, dividing the different parts of presentation (introduction, methods, results and discussion). They both participate in the final discussion with the students that have prepared questions. Each student will be graded individually. There are no minimum grades. The grade will count for 25% of the final grade.

Each student has to write a research proposal. The students can choose a subject preferable related to one of the thematic blocks. There is no minimum grade, the proposal grade is 25% of the final grade. 

The final grade has be higher than a 5.5 to pass the course. 

There is no opportunity to retake the exams. Depending on the scores on the different part of the course, an assignment can be repeated to improve on the final grade. 

Inspection of assessed work

Contact the course coordinator to make an appointment for inspection.

The students can only request an appointment for inspection after all the grades are in and the final score has been calculated and communicated with the students. IN general this is within 6 weeks after the end of the course. 

Assignments

research proposal

  • writing of a research proposal related to a specific theme in the course

This assignment is to be made individually. The students have the opportunity to discuss with the course coordinator, the subject and approach of the research project. They have several occasions at which they can ask for input, guidance and feedback. 

The assignment is graded by the block coordinator and the course coordinator. Feedback on the assignment is either given in writing (corrected version) or can be communicated in person. 

Fraud and plagiarism

The 'Regulations governing fraud and plagiarism for UvA students' applies to this course. This will be monitored carefully. Upon suspicion of fraud or plagiarism the Examinations Board of the programme will be informed. For the 'Regulations governing fraud and plagiarism for UvA students' see: www.student.uva.nl

Course structure

DATE / TIME   SUBJECT TEACHER
       
MONDAY  5/oct    
13.00-13.50   Introduction course Roderick Beijersbergen
14.00-14.50   Introduction course Roderick Beijersbergen
coffee break      
15.10-16.00   TBA  
16.10-17.00   TBA  
       
TUESDAY  6/Oct    
9.00 - 9.50   Radiotherapy Monique de Jong
10.00 - 10.50   Radiotherapy Monique de Jong
coffee break   walk to RT department-meet in hallway before RTdept  
11.10-12.20   Tour radiotherapy-start reception RT Monique/Monica/Anja/Erin 2120
lunch break      
13.00 - 13.50   Epidemiology Floor van Leeuwen
14.00 - 14.50   Epidemiology Floor van Leeuwen
       
WEDNESDAY  7/Oct    
9.00 - 9.50   Intro subject 1 DNA damage Hein te Riele (coordinator) 
10.00 - 10.50   Intro subject 1 DNA damage Hein te Riele (coordinator) 
coffee break      
11.10 - 12.00   State-of-the-art lecture Conchita Vens
12.10 - 13.00   State-of-the-art lecture TBA
       
afternoon until 16.00 uur Z4 Preparation exam, student presentations, questions NKI, Z4, in group
       
THURSDAY 8/Oct    
9.00 - 9.50   Next generation sequencing Ron Kerkhoven
10.00 - 10.50   Next generation sequencing Ron Kerkhoven
coffee break      
11.10 - 12.00   Advanced early cancer diagnostics Beatriz Carvalho
12.10 - 13.00   Advanced early cancer diagnostics Remond Fijneman
       
until 14.45 Z4-after Z5 Preparation exam, student presentations, questions NKI, Z4 and Z5, in group
       
FRIDAY  9/Oct    
9.00 - 12.00   Student presentations and discussions, subject 1  
lunch break      
13.00 - 13.45   Conventional Chemotherapy Frans Opdam
13.45 - 14.30   Conventional Chemotherapy Frans Opdam
coffee break      
15.00 - 16.30   Instruction on how to write a research proposal Roderick Beijersbergen
       
WEEKEND   Preparation exam subject 1 and proposals  
COURSE ON EXPERIMENTAL ONCOLOGY  
     
 
Date   September 30  - October 25, 2019  
Location   Meeting Room Z4, Netherlands Cancer Institute  
       
       
DATE / TIME   SUBJECT TEACHER
       
MONDAY  12/Oct    
9.00 - 9.50   exam subject 1  
10.00 - 10.50   Telomeres and Cancer Jacqueline Jacobs
11.00 - 11.50   Telomeres and Cancer Jacqueline Jacobs
lunch break      
12.30 - 13.20   Shaping the genome in interphase and mitosis Benjamin Rowland
13.30 - 14.20   Shaping the genome in interphase and mitosis Benjamin Rowland
       
TUESDAY  13/Oct    
9.00 - 9.50   Building mouse models for cancer Ivo Huijbers
10.00 - 10.50   Building mouse models for cancer Ivo Huijbers
coffee break      
11.10 - 12.00   The study of mouse models for cancer Jos Jonkers
12.10 - 13.00   The study of mouse models for cancer Jos Jonkers
       
WEDNESDAY  14/Oct    
9.00 - 9.50   Intro subject 2: Hormone Regulated Cancers Andre Bergman
10.00 - 10.50   Intro subject 2: Hormone Regulated Cancers Wilbert Zwart (coordinator)
coffee break      
11.10 - 12.00   State-of-the-art lecture Hugo Horlings
12.10 - 13.00   Tour Pathology Hugo Horlings
       
afternoon until 15.00 uur Z4 Preparation exam, student presentations, questions, proposals NKI, Z4, in group
       
THURSDAY 15/Oct    
9.00 - 9.50   Epigenetics and cancer - introduction Bas van Steensel
10.00 - 10.50   Epigenetics and cancer - introduction Bas van Steensel
coffee break      
11.10 - 12.00   State of the art lecture - Epigenetics Fred van Leeuwen
12.10 - 13.00   Epigenetics workshop Fred van Leeuwen
       
afternoon until 16.00 uur Z4 Preparation exam, student presentations, questions, proposals NKI, Z4, in group
       
FRIDAY  16/Oct    
9.00 - 12.00   Student presentations and discussions, subject 2 NKI, Z4, in group
       
WEEKEND   Preparation exam subject 2 and proposals  
COURSE ON EXPERIMENTAL ONCOLOGY  
       
Date   September 30  - October 25, 2019
 
Location   Meeting Room Z4, Netherlands Cancer Institute  
       
       
DATE / TIME   SUBJECT TEACHER
       
MONDAY  19/Oct    
9.00 - 9.50   exam subject 2  
10.00 - 10.50   Protein structure and drug design Titia Sixma
11.00 - 11.50   Protein structure and drug design Titia Sixma
lunch break      
12.30 - 13.20   The non-coding landscape and cancer Reuven Agami
13.30 - 14.20   The non-coding landscape and cancer Reuven Agami
       
TUESDAY  20/Oct    
9.00 - 9.50   RNA translation and the ribosome William Faller
10.00 - 10.50   RNA translation and the ribosome William Faller
coffee break      
11.10 - 12.00   Cancer genomics TBA
12.10 - 13.00   Cancer genomics TBA
       
WEDNESDAY  21/Oct    
9.00 - 9.50   Intro subject 3: Targeted Therapy and Resistance Roderick Beijersbergen (coordinator)
10.00 - 10.50   Intro subject 3: Targeted Therapy and Resistance Roderick Beijersbergen (coordinator)
coffee break      
11.10 - 12.00   State-of-the-art lecture Rene Bernards 
12.10 - 13.00   State-of-the-art lecture Rene Bernards
       
afternoon until 15.00 uur Z4 Preparation exam, student presentations, questions, proposals NKI, Z4, in group
       
THURSDAY 22/Oct    
10.00 - 10.50   Functional genomic screens Thijn Brummelkamp 
coffee break      
11.10 - 12.00   Targeted therapy in Melanoma Daniel Peeper
12.10 - 13.00   Targeted therapy in Melanoma Daniel Peeper
       
afternoon until 15.00 uur Z4 Preparation exam, student presentations, questions, proposals NKI, Z4, in group
       
FRIDAY  23/Oct    
9.00 - 12.00   Student presentations and discussions, subject 3 NKI, Z4, in group
       
WEEKEND   Preparation exam subject 3 and proposals  
COURSE ON EXPERIMENTAL ONCOLOGY  
       
Date   September 30  - October 25, 2019  
Location   Meeting Room Z4, Netherlands Cancer Institute
 
       
       
DATE / TIME   SUBJECT TEACHER
       
MONDAY  26/Oct    
9.00-9.50   exam subject 3  
10.00-10.50   Intro subject 4: Immunology and Immunotherapy Leila Akkari (coordinator)
11.00-11.50   Intro subject 4: Immunology and Immunotherapy Leila Akkari (coordinator)
lunch break      
13.00 - 13.50   Tumor microenvironment Karin de Visser
14.00 - 14.50   Tumor microenvironment Karin de Visser
       
TUESDAY  27/Oct    
9.00 - 9.50   TBA TBA
10.00 - 10.50   TBA TBA
coffee break      
11.00 - 11.50   State-of-the-art lecture John Haanen 
12.10 - 13.00   State-of-the-art lecture Joke den Haan
       
afternoon until 15.00 uur Z4 Preparation exam, student presentations, questions, proposals NKI, Z4, in group
       
WEDNESDAY  28/Oct    
9.00 - 9.50   Radio-immuno cancer therapy Inge Verbrugge
10.00 - 10.50   Radio-immuno cancer therapy Inge Verbrugge
coffee break      
11.10 - 12.00   Macrophages in the Tumor Microenvironment: Origin, plasticity and Targeting Leila  Akkari
12.10 - 13.00   Macrophages in the Tumor Microenvironment: Origin, plasticity and Targeting Leila  Akkari
       
afternoon until 15.00 uur Z4 Preparation exam, student presentations, questions, proposals NKI, Z4, in group
       
THURSDAY 29/Oct    
9.00 - 12.00   Student presentations and discussions, subject 4  
       
afternoon until 15.00 uur Z4 Preparation exam subject 4  
       
FRIDAY 30/Oct    
14.00 - 14.50   exam subject 4 NKI, Z4
15.00 - 16.00   feedback and evaluation course followed by drinks Roderick Beijersbergen
       
SUNDAY 01/nov    
before 24.00   deadline submission research proposal by mail  

Additional information

Course will be held at the NKI-AVL, Plesmanlaan 121, Amsterdam
For information, contact mw. Patty Lagerweij (p.lagerweij@nki.nl)

Homepage NKI-AVL: http://www.nki.nl

Contact information

Coordinator

  • dr. R.L. Beijersbergen PhD