Course manual 2019/2020

Course content

This course provides knowledge on recent developments in plant breeding and future prospects in plant biotechnology. A thorough understanding of plant breeding and genetic modification is linked to applications in various fields (crop improvement, functional food, medicines, soil remediation and biofuel production). After a general introduction into a field, recent papers covering new developments in biotechnology will be discussed by/with the participants. Students should get acquainted with technological challenges and possibilities of Plant Biotechnology. Through case studies, societal aspects of the application of current GM-crops will be discussed. Invited lectures from Plant Breeding companies will illustrate the state of the art in applied plant breeding.

The following subjects will be dealt with:

  • Modern plant breeding (DNA markers, Targeted modification tools)
  • Plant transformation, T-DNA integration and expression
  • Epigenetics,RNAi methodology and application
  • Plant architecture
  • Genetics of Flower colot
  • GM-Crops worldwide (including societal aspects)
  • Plants as sources for food supplements and nutrients
  • Production of pharmaceutical proteins and chemicals
  • Biofuel production
  • Phytoremediation

Study materials

Syllabus

  • Selected book chapters, recent review articles, scientific papers

Objectives

    Teaching methods

    • Lecture
    • Computer lab session/practical training
    • Presentation/symposium

    Learning activities

    Activity

    Number of hours

    Computerpracticum

    4

    Hoorcollege

    22

    Presentatie

    12

    Tentamen

    3

    Vragenuur

    2

    Werkcollege

    2

    Zelfstudie

    123

    Total 6 EC x 28 h

    168

     

    Attendance

    The programme does not have requirements concerning attendance (OER-B).

    Additional requirements for this course:

    Attendance at lectures is highly recommended. Attendance of student presentations and group discussions is mandatory. Attendance during computer practical is mandatory.

    Assessment

    Item and weight Details

    Final grade

    0.6 (60%)

    Tentamen

    Must be ≥ 5.5

    0.3 (30%)

    Reviews and presentations

    Must be ≥ 5.5

    0.1 (10%)

    Computer practicals

    Must be ≥ 5.5

    The exam is an "Open Book" type of exam. The powerpoints of the lectures, the paper reviews, the students presentation and the papers used in the assignments can be brought with you to the exam. You will have 10 question to answers that will test your knowledge and insight in the study matters.

    Inspection of assessed work

    The manner of inspection will be communicated via the lecturer's website.

    Assignments

    Presentation

    • Students individually prepare a presentation of a scientific paper and discuss the results in a broader context. There are four sessions with presentations. Students give feedback and will grade the presentation, the lecturer will give the final grade and feedback.

    Reviews

    • Those students that do not present a paper will be asked to give a short review of one of the papers that are presented by their peers. They will summarize the major findings of the paper and critically evaluate the results in a one page review. In this review future prospects of the research line will be discussed. The lecturer grades the paper and provides feedback.

    Computer practical

    • Students receive a DNA sequence that they have to annotate (structure, function, on line data) and comment on with regard to the role of such a “candidate” gene in a specific process, for instance salt stress responses. Based on a tutorial students will fill in a report with regard to the gene under investigation. They work in teams of two students and hand in a digital report of their findings with regard to the gene assigned to them.

    Fraud and plagiarism

    The 'Regulations governing fraud and plagiarism for UvA students' applies to this course. This will be monitored carefully. Upon suspicion of fraud or plagiarism the Examinations Board of the programme will be informed. For the 'Regulations governing fraud and plagiarism for UvA students' see: www.student.uva.nl

    Course structure

    Weeknummer Onderwerpen Studiestof
    1
    2
    3
    4
    5
    6
    7
    8

    Timetable

    The schedule for this course is published on DataNose.

    Contact information

    Coordinator

    • prof. dr. M.A. Haring

    Staff

    • dr. P.M. Bleeker
    • M. van der Gragt MSc
    • F. Quattrocchio
    • dr. M.E. Stam