Course manual 2022/2023
Course content
- Neurophysiology basics & techniques: electrophysiology (intracellular recordings; single, multi-unit, and population extracellular recordings), cellular imaging (two-photon), neurophysiology (population coding, brain rhythms, place fields), optogenetics
- Clinical neurophysiology: neuroimaging, nuclear medicine, neurology
- Advanced cognitive neurobiology: consciousness and perception, multisensory integration, oscillatory networks, human invasive electrophysiology
- Additional clinical lectures
Study materials
Literature
- Kandel, E.R. et al., Principles of Neural Science, Fifth Edition, McGraw-Hill
Other
- Lecturers will provide most of the study materials.
Objectives
- Explain in brain systems function, neural mechanisms of cognition and cognition-related brain disorders
- Describe and use neural techniques, mainly to measure and manipulate neural activity directly and with high spatio-temporal resolution
- Apply methodologies for the quantification of neural data & statistics
- Critically evaluate results and interpret neural data
- Interpret specialized neuroscientific literature
- Defend their answers, results and opinions in discussion/debating sessions
Teaching methods
- Lectures on Neurophysiology basics & techniques
- Home work assignments & return sessions
- Anatomy practicals (human & animal)
- Course part @ AMC: lectures and practicals on clinical neurophysiology
- Lectures on Advanced Cognitive Neurobiology
- Additional Clin. Neurophysiology lectures
- Workshops @ FNWI
- Lectures on Neurophysiology basics & techniques
- Home work assignments & return sessions
- Anatomy practicals (human & animal)
- Course part @ AMC: lectures and practicals on clinical neurophysiology
- Lectures on Advanced Cognitive Neurobiology
- Additional Clin. Neurophysiology lectures
- Workshops @ FNWI
Learning activities
Activity | Number of hours |
Computerpracticum | 39 |
Deeltoets | 4 |
Hoorcollege | 83 |
Practicum | 19 |
Presentatie | 46 |
Tentamen | 3 |
Vragenuur | 2 |
Zelfstudie | 2 |
Zelfstudie | 138 |
Attendance
Requirements of the programme concerning attendance (OER-B):
- Attendance during practical components exercises is mandatory.
Additional requirements for this course:
Students are required to participate in workgroups (a.k.a. "return sessions") and all practical activities (workshops, anatomy practicals, ...)
Assessment
Inspection of assessed work
The manner of inspection will be communicated via the digitial learning environment.
Fraud and plagiarism
The 'Regulations governing fraud and plagiarism for UvA students' applies to this course. This will be monitored carefully. Upon suspicion of fraud or plagiarism the Examinations Board of the programme will be informed. For the 'Regulations governing fraud and plagiarism for UvA students' see: www.student.uva.nl
Course structure
| Date |
Room booked from |
Booking Duration |
Actual Start Time |
Lecture expected duration |
Locations |
Groups |
Topic |
Type |
Staff |
Type |
| 5-Sep-2016 |
9 |
4 |
10 |
1 |
F2.04 |
|
Introduction to MSc track and ACN2 course |
Intro |
Olcese |
Basics |
| |
|
|
11 |
2 |
F2.04 |
|
Neurophysiology basics |
Lecture |
Lansink |
|
| 5-Sep-2016 |
13 |
4 |
13 |
4 |
G3.10 |
|
Matlab recap |
Lecture |
Olcese |
|
| 6-Sep-2016 |
9 |
4 |
10 |
2 |
G0.05 |
|
Single-neuron recordings |
Lecture |
Lorteije |
|
| 7-Sep-2016 |
9 |
4 |
9 |
2 |
F2.04 |
|
Extracellular recordings: ensemble |
Lecture |
Pennartz |
|
| 7-Sep-2016 |
13 |
2 |
13 |
1 |
F2.04 |
A |
Single-neuron recordings |
Homework |
Lorteije |
|
| 8-Sep-2016 |
9 |
4 |
9 |
2 |
D1.116 |
|
Place cells and replay |
Lecture |
Lansink |
|
| 9-Sep-2016 |
9 |
4 |
11 |
2 |
F2.04 |
|
Two-photon imaging |
Lecture |
Meijer |
|
| 9-Sep-2016 |
15 |
2 |
15 |
1 |
D1.111 |
B |
Extracellular recordings: ensemble |
Homework |
Pennartz |
|
| |
|
|
|
|
|
|
|
|
|
|
| 12-Sep-2016 |
9 |
4 |
10 |
2 |
D1.116 |
|
Extracellular recordings: local field potentials |
Lecture |
Bosman |
|
| 12-Sep-2016 |
15 |
2 |
16 |
1 |
D1.110 |
A |
Place cells and replay |
Homework |
Lansink |
|
| 13-Sep-2016 |
9 |
4 |
11 |
2 |
A1.14 |
|
Brain rhythms and coherence |
Lecture |
Bosman |
|
| 13-Sep-2016 |
13 |
2 |
13 |
1 |
G5.29 |
|
Workshop presentation |
Practical |
Olcese, AIOs |
Workshops |
| 14-Sep-2016 |
9 |
4 |
9 |
2 |
D1.113 |
|
Optogenetics |
Lecture |
Olcese |
|
| 14-Sep-2016 |
13 |
2 |
13 |
1 |
G2.02 |
B |
Two-photon imaging |
Homework |
Meijer |
|
| 15-Sep-2016 |
15 |
2 |
15 |
1 |
F2.04 |
A |
Extracellular recordings: local field potentials |
Homework |
Bosman |
|
| 16-Sep-2016 |
9 |
4 |
11 |
1 |
G4.15 |
B |
Brain rhythms and coherence |
Homework |
Bosman |
|
| 16-Sep-2016 |
13 |
2 |
13 |
1 |
A1.06 |
A |
Optogenetics |
Homework |
Olcese |
|
| |
|
|
|
|
|
|
|
|
|
|
| 19-Sep-2016 |
9 |
2 |
9 |
2 |
AMC HvA D1.30 |
|
MR fysica |
Hoorcollege |
dr. E.M. Akkerman |
AMC |
| 19-Sep-2016 |
12 |
3 |
12 |
3 |
MRI scan room |
see online |
MRI Scan |
Practicum |
dr. M.W.A. Caan |
|
| 20-Sep-2016 |
13 |
4 |
13 |
4 |
AMC L01-211 |
|
practicum: SPM |
Computerpracticum |
dr. M.W.A. Caan |
|
| 21-Sep-2016 |
14 |
3 |
14 |
3 |
AMC L01-211 |
|
DTI |
Hoorcollege |
dr. M.W.A. Caan |
|
| 22-Sep-2016 |
10:30 |
2 |
10:30 |
2 |
AMC HvA D1.30 |
|
fMRI, GLM 1+2 |
Hoorcollege |
Guido van Wingen |
|
| 22-Sep-2016 |
13 |
4 |
13 |
4 |
AMC L01-211 |
|
practicum: GLM 1 |
Computerpracticum |
dr. M.W.A. Caan |
|
| 23-Sep-2016 |
14 |
4 |
14 |
4 |
AMC L01-211 |
|
practicum: DTI |
Computerpracticum |
dr. M.W.A. Caan |
|
| |
|
|
|
|
|
|
|
|
|
|
| 26-Sep-2016 |
13 |
4 |
13 |
4 |
G3.10 |
|
Internship presentations |
Special |
Pennartz, Olcese, Bosman, PhD Students |
Extra |
| 27-Sep-2016 |
9 |
4 |
9 |
4 |
AMC HvA C2.42 |
|
DBS |
Computerpracticum |
Wouters Potters |
|
| 28-Sep-2016 |
13 |
4 |
13 |
4 |
AMC HvA D1.30 |
|
nucleaire geneeskunde |
Hoorcollege |
dr. J. Booij, dr T. de Wit |
|
| 29-Sep-2016 |
9 |
4 |
9 |
4 |
AMC D2-107 balie KNF |
|
neurologie |
Hoorcollege |
dr. F. van Rootselaar |
|
| 30-Sep-2016 |
9 |
4 |
9 |
3 |
AMC CZ-3 |
|
Interim exam |
Deeltoets |
dr. M.W.A. Caan |
|
| |
|
|
|
|
|
|
|
|
|
|
| 3-Oct-2016 |
13 |
6 |
13 |
6 |
B1.24ABC |
|
Workshops |
Practical |
AIOs |
Workshops |
| 4-Oct-2016 |
9 |
2 |
9 |
2 |
G3.10 |
|
Workshops |
Practical |
AIOs |
|
| 4-Oct-2016 |
13 |
6 |
13 |
6 |
B1.24ABC |
|
Workshops |
Practical |
AIOs |
|
| 5-Oct-2016 |
13 |
6 |
13 |
6 |
B1.24ABC |
|
Workshops |
Practical |
AIOs |
|
| 6-Oct-2016 |
9 |
2 |
9 |
2 |
G2.23 |
|
Workshop symposium preparation |
Practical |
self-study |
|
| 6-Oct-2016 |
13 |
6 |
13 |
6 |
B1.24ABC |
|
Workshops |
Practical |
AIOs |
|
| 7-Oct-2016 |
9 |
2 |
9 |
2 |
G0.23-G0.25 |
|
Parkinson/Alzheimer |
Lecture |
Schmand |
Clinical |
| 7-Oct-2016 |
11 |
4 |
11 |
4 |
G2.23 |
|
Workshop symposium preparation |
Practical |
self-study |
|
| 7-Oct-2016 |
15 |
2 |
16 |
1 |
C0.05 |
|
Churchland lecture |
Special |
Lansink |
|
| |
|
|
|
|
|
|
|
|
|
|
| 10-Oct-2016 |
13 |
4 |
13 |
4 |
G2.23 |
A |
Animal anatomy |
Practical |
Haberham |
Anatomy |
| 10-Oct-2016 |
11 |
4 |
11 |
4 |
AMC |
B |
Human anatomy |
Practical |
Aronica |
|
| 11-Oct-2016 |
13 |
4 |
13 |
4 |
G2.23 |
B |
Animal anatomy |
Practical |
Haberham |
|
| 11-Oct-2016 |
10 |
4 |
10 |
4 |
AMC |
A |
Human anatomy |
Practical |
Aronica |
|
| 12-Oct-2016 |
9 |
4 |
9 |
2 |
F2.04 |
|
Mass-neuronal dynamics in health and disease |
Lecture |
Linkenkaer |
Advanced |
| 12-Oct-2016 |
13 |
2 |
13 |
2 |
G2.02 |
|
Perceptual grouping |
Lecture |
Roelfsema |
|
| 13-Oct-2016 |
9 |
4 |
11 |
1 |
D1.116 |
B |
Mass-neuronal dynamics in health and disease |
Homework |
Linkenkaer |
|
| 14-Oct-2016 |
9 |
4 |
9 |
4 |
D1.113 |
|
Workshop symposium |
Practical |
Olcese, AIOs |
|
| |
|
|
|
|
|
|
|
|
|
|
| 17-Oct-2016 |
9 |
4 |
10 |
2 |
D1.110 |
|
Neural representations, consciousness, and sleep |
Lecture |
Pennartz |
|
| 17-Oct-2016 |
13 |
2 |
13 |
1 |
G4.15 |
A |
Perceptual grouping |
Homework |
Roelfsema |
|
| 18-Oct-2016 |
9 |
4 |
9 |
2 |
G0.05 |
|
Human invasive electrophysiology |
Lecture |
Bosman |
|
| 18-Oct-2016 |
13 |
2 |
13 |
2 |
B0.203 |
|
Neocortical circuits for multisensory integration |
Lecture |
Olcese |
|
| 19-Oct-2016 |
9 |
4 |
9 |
2 |
D1.113 |
|
BCI |
Lecture |
Aarnoutse |
|
| 19-Oct-2016 |
13 |
2 |
13 |
1 |
B0.203 |
|
Workshop report preparation |
Practical |
self-study |
|
| 20-Oct-2016 |
9 |
4 |
9 |
1 |
B0.203 |
B |
Neocortical circuits for multisensory integration |
Homework |
Olcese |
|
| 20-Oct-2016 |
13 |
2 |
13 |
1 |
D1.113 |
A |
Human invasive electrophysiology |
Homework |
Bosman |
|
| 21-Oct-2016 |
9 |
4 |
9 |
2 |
D1.111 |
|
DBS |
Lecture |
Figee |
|
| 21-Oct-2016 |
13 |
2 |
13 |
1 |
B0.203 |
B |
Neural representations, consciousness, and sleep |
Homework |
Pennartz |
|
| |
|
|
|
|
|
|
|
|
|
|
| 26-Oct-2016 |
9 |
2 |
9 |
2 |
B0.207 |
|
PEPS |
Lecture |
Bosman |
|
| 26-Oct-2016 |
11 |
2 |
11 |
2 |
B0.207 |
|
|
Vragenuur |
Pennartz, Olcese |
|
| 27-Oct-2016 |
9 |
3 |
9 |
3 |
B0.201 |
|
|
Tentamen |
Pennartz, Olcese |
|
| |
|
|
|
|
|
|
|
|
|
|
| 9-Jan-2017 |
9 |
3 |
9 |
3 |
G3.05 |
|
|
Hertentamen |
Pennartz, Olcese |
|
|
Onderwerpen |
Studiestof |
| 1 |
|
|
| 2 |
|
|
| 3 |
|
|
| 4 |
|
|
| 5 |
|
|
| 6 |
|
|
| 7 |
|
|
| 8 |
|
|
The schedule for this course is published on DataNose.
Prerequisites: Basic neurophysiology
The maximum number of students is 25. Admission to the course will depend on the capacity, the total number of applications, the date of registration and background of the individual student. If the number of applications exceeds the capacity of the course, student may have to be selected and priority will be given, in the following order:
- first-year students of the track Cognitive Neurobiology and Clinical Neurophysiology
- second-year students of the track Cognitive Neurobiology and Clinical Neurophysiology
- master students of the tracks Psychopharmacology & Pathophysiology or Basic and Applied Neuroscience
- master students of other programs
Coordinator