6 EC
Semester 1, period 1
5234EXPO6Y
| Owner | Master Biomedical Sciences |
| Coordinator | R.L. Beijersbergen PhD |
| Part of | Master Biomedical Sciences, track Oncology, |
The master course experimental oncology deals with the main themes of basic cancer research and treatment, the implications of groundbreaking new research for diagnosis and treatment of cancer, and the clinical implementation. Teachers are fundamental researchers and clinicians involved in the development and implementation of state-of-the-art cancer therapies. Topics include e.g. molecular cancer diagnostics, the hallmarks of cancer, mechanisms of drug resistance, immunotherapy of cancer. The course evolves around four major themes; hormone regulated cancers, DNA damage and genomic instability, targeted therapy and resistance and immunology and immunotherapy. Lectures covering different fields of research and treatment provide background and reference. The different topics will be dealt with in lectures, workshops and assignments (essay with pitch presentation, a group assignment with presentation and a research proposal with pitch).
Recommended prior knowledge
Solid, advanced knowledge in the areas of cell biology and genetics (eg. courses Celbiologie (6 EC), Moleculaire Biologie/Biochemie (T) (6 EC), Anatomie en Ontwikkelingsbiologie (12 EC), Medische Biochemie en Pathofysiologie (12 EC)).
The biology of cancer by R.A. Weinberg (2nd edition).
electronic copies of Handouts
Lectures provide the general background and the current standing of the respective clinical or research field. They also introduce the latest developments and insights in the respective research area. lectures given by experts in the respective research field.
There will be 3 workshops each around a specific theme. Students will get assignments schie will be discussed within the group.
There are 2 "interview the teacher" sessions in which the students prepare questions based on information provided by the teacher to get familiar with the research field, the current concepts and discuss open questions.
The students have to write an essay on the historical development of a targeted drug in clinical use and present their findings in a pitch presentation.
The students have to address an outstanding question in oncology in a small group. They have to investigate recent findings, implications, shortcomings and future research for this question in relation to technological developments. The group presents the findings in a presentation.
Each student has to independently write a research proposal on a research topic captured during the course. They will have to define the research question and discuss its relevance, generate a hypothesis, discuss the experimental approach to test the hypothesis and discuss the potential outcomes. Each student will present the research proposal in a pitch presentation followed by a short discussion.
During the course introductions and workshops are provided for the different assignments in the course. The students will provide feedback to their peers and will receive feedback on the different steps in the assignments.
|
Activity |
Number of hours |
| lectures | 36 |
| workshops | 12 |
| preparation | 47 |
| presentations | 18 |
| feedback | 10 |
| Self Study | 45 |
| Totaal 6 EC a 28 h | 168 |
Requirements of the programme concerning attendance (OER-B):
Additional requirements for this course:
presence at lectures and workshops is mandatory
Completion of assignments, written and presentations is mandatory
Absence needs to be communicated with the course coordinator
| Item and weight | Details |
|
Final grade | |
|
1% assignment 1 essay and peer review | Bonus |
|
20% assignment 2 written part | |
|
15% assignment 2 presentation | |
|
15% assignment 3 presentation | |
|
30% research proposal written part | |
|
20% research proposal pitch presentation |
The final grade has be higher than a 5.5 to pass the course.
If a deadline for a assignment is not met, that part will be graded zero ( 0)
Contact the course coordinator to make an appointment for inspection.
The students can only request an appointment for inspection after all the grades are in and the final score has been calculated and communicated with the students.
exercise in writing a short essay about the history and development of a target therapeutic
Peer review of short essay
both assignments are graded 0-1-2
written essay about the history and development of a target therapeutic graded 0-10
Short presentations about the history and development of a target therapeutic graded 0-10
presentation about an outstanding question in oncology related to new technologies graded 0-10
written research proposal on oncology related subject/problem graded 0-10
presentation research proposal on oncology related subject/problem graded 0-10
The 'Regulations governing fraud and plagiarism for UvA students' applies to this course. This will be monitored carefully. Upon suspicion of fraud or plagiarism the Examinations Board of the programme will be informed. For the 'Regulations governing fraud and plagiarism for UvA students' see: www.student.uva.nl
| COURSE ON EXPERIMENTAL ONCOLOGY | |||
| Date | October 3 to October 28, 2021 | ||
| Location | room Z4 in NKI | ||
| DATE / TIME | SUBJECT | TEACHER | |
| MONDAY | 3/Oct | ||
| 9.00 - 9.50 | Introduction course | Roderick Beijersbergen | |
| 10.00 - 10.50 | Introduction assignment 1 and 2 | Roderick Beijersbergen | |
| coffee break | |||
| 11.10 - 12.00 | Epidemiology | TBD | |
| 12.10 - 13.00 | Epidemiology | TBD | |
| lunch break | |||
| 13.30 - 14.20 | Radiotherapy | Monique de Jong | |
| 14.30 - 15.20 | Radiotherapy | Monique de Jong | |
| Self-study preparation lecture Clinical trials | |||
| DATE / TIME | SUBJECT | TEACHER | |
| TUESDAY | 4/Oct | ||
| 9.00 - 9.50 | Clinical trials | Marcel Soesan | |
| 10.00 - 10.50 | Clinical trials | Marcel Soesan | |
| coffee break | |||
| 11.10 - 12.00 | Survival data analysis | TBD | |
| 12.10 - 13.00 | Survival data analysis | TBD | |
| preparation assigment 1 | |||
| 24.00 | Before 24.00 submit assignment 1 | ||
| DATE / TIME | SUBJECT | TEACHER | |
| WEDNESDAY | 5/Oct | ||
| 9.00 - 9.50 | Workshop Hormone Regulated Cancers | ||
| 10.00 - 10.50 | Wilbert Zwart (coordinator) | ||
| coffee break | Andre Bergman | ||
| 11.10 - 12.00 | Hugo Horlings | ||
| 12.10 - 13.00 | |||
| lunch break | |||
| 13.30 - 16.00 | feedback and discussion assigment 1 | Roderick Beijersbergen | |
| DATE / TIME | SUBJECT | TEACHER | |
| THURSDAY | 6/Oct | ||
| preparation assignment 2 | |||
| 24.00 |
Deadline for submitting slides for pitch presentation assignment 2 by mail |
||
| DATE / TIME | SUBJECT | TEACHER | |
| FRIDAY | 7/Oct | ||
| 9.00 - 9.50 | pitch presentations assigment 2 | Roderick Beijersbergen | |
| 10.00 - 10.50 | |||
| coffee break | |||
| 11.10 - 12.00 | pitch presentations assigment 2 | ||
| 12.10 - 13.00 | |||
| lunch break | |||
| 13.30 - 14.20 | pitch presentations assigment 2 | ||
| 14.30 - 15.20 | |||
| MONDAY | 10/Oct | ||
| 9.00 - 9.50 | Next generation sequencing | Arno Velds | |
| 10.00 - 10.50 | Next generation sequencing | Roderick Beijersbergen | |
| coffee break | |||
| 11.10 - 12.00 | Introduction assignment 3 | Roderick Beijersbergen | |
| 12.10 - 13.00 | Introduction research proposal | Roderick Beijersbergen | |
| lunch break | |||
| 13.30 - 14.20 | preparation assigment 3 | in groups | |
| 14.30 - 15.20 | |||
| 15.30 - 16.20 | |||
| TUESDAY | 11/Oct | ||
| 9.00 - 9.50 | DDT and TLS | Heinz Jacbobs | |
| 10.00 - 10.50 | HR and TMEJ | Marcel Tijsterman (LUMC) | |
| coffee break | |||
| 11.10 - 12.00 | Aneuploidy and CIN | Jonne Raaijmakers | |
| 12.10 - 13.00 | |||
| Preparation interview the teacher: Benjamin Rowland | |||
| DATE / TIME | SUBJECT | TEACHER | |
| WEDNESDAY | 12/Oct | ||
| 9.00 - 9.50 | Interview the teacher: Benjamin Rowland | Benjamin Rowland | |
| 10.00 - 10.50 | Shaping the genome in interphase and mitosis | Benjamin Rowland | |
| coffee break | |||
| 11.10 - 12.00 | feedback and discussion assigment 3 | Roderick Beijersbergen | |
| 12.10 - 13.00 | feedback and discussion assigment 3 | Roderick Beijersbergen | |
| lunch break | |||
| 13.30 - 14.20 | preparation assigment 3 | in groups | |
| 14.30 - 15.20 | and research proposal | ||
| DATE / TIME | SUBJECT | TEACHER | |
| THURSDAY | 13/Oct | ||
| 9.00 - 9.50 | Workshop: Epigenetic and Cancer | Fred van Leeuwen | |
| 10.00 - 10.50 | Elzo de Wit | ||
| coffee break | |||
| 11.10 - 12.00 | |||
| 12.10 - 13.00 | |||
| lunch break | |||
| 13.30 - 14.20 | How to write a research proposal | Roderick Beijersbergen | |
| 14.30 - 15.20 | How to write a research proposal | Roderick Beijersbergen | |
| DATE / TIME | SUBJECT | TEACHER | |
| FRIDAY | 14/Oct | ||
| preparation assignment 3 and research proposal | |||
| MONDAY | 17/Oct | ||
| 9.00 - 9.50 | Cancer genomics | Lodewyk Wessels | |
| 10.00 - 10.50 | Cancer genomics | Lodewyk Wessels | |
| coffee break | |||
| 11.10 - 12.00 | Targeted Therapy | Roderick Beijersbergen | |
| 12.10 - 13.00 | Targeted Therapy | Roderick Beijersbergen | |
| lunch break | |||
| 13.30 - 14.20 | preparation assignment 3 | in groups | |
| 14.30 - 15.20 | and research proposal | ||
| 15.30 - 16.20 | |||
| DATE / TIME | SUBJECT | TEACHER | |
| TUESDAY | 18/Oct | ||
| 9.00 - 9.50 | Workshop: Functional genomic screening | ||
| 10.00 - 10.50 | Thijn Brummelkamp | ||
| coffee break | Roderick Beijersbergen | ||
| 11.10 - 12.00 | |||
| 12.10 - 13.00 | |||
| Preparation interview the teacher: Rene Bernards | |||
| DATE / TIME | SUBJECT | TEACHER | |
| WEDNESDAY | 19/Oct | ||
| 9.00 - 9.50 | Interview the teacher: Rene Bernards | Rene Bernards | |
| 10.00 - 10.50 | Novel strategies for targeted therapy | Rene Bernards | |
| coffee break | |||
| 11.10 - 12.00 | Advanced early cancer diagnostics | Beatriz Carvalho | |
| 12.10 - 13.00 | Advanced early cancer diagnostics | Remond Fijneman | |
| lunch break | |||
| 13.30 - 14.20 | preparation assignment 3 | in groups | |
| 14.30 - 15.20 | and research proposal | ||
| 15.30 - 16.20 | |||
| DATE / TIME | SUBJECT | TEACHER | |
| THURSDAY | 20/Oct | ||
| 9.00 - 9.50 | RNA translation and the ribosome | William Faller | |
| 10.00 - 10.50 | RNA translation and the ribosome | William Faller | |
| coffee break | |||
| 11.10 - 12.00 | mRNA translation and | Remco Nagel | |
| 12.10 - 13.00 | cancer immunotherapy | Remco Nagel | |
| lunch break | |||
| 13.30 - 14.20 | Feedback and discussion research proposal | Roderick Beijersbergen | |
| 14.30 - 15.20 | Feedback and discussion research proposal | Roderick Beijersbergen | |
| 24.00 | deadline for submitting slides for presentation assignment 3 by mail | ||
| FRIDAY | 21/Oct | ||
| 9.00 - 9.50 | presentations assigment 3 | Roderick Beijersbergen | |
| 10.00 - 10.50 | |||
| coffee break | |||
| 11.10 - 12.00 | presentations assigment 3 | ||
| 12.10 - 13.00 | |||
| lunch break | |||
| 13.30 - 14.20 | presentations assigment 3 | ||
| 14.30 - 15.20 |
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| MONDAY | 24/Oct | ||
| 9.00 - 9.50 | Feedback and discussion research proposal | Roderick Beijersbergen | |
| 10.00 - 10.50 | Feedback and discussion research proposal | Roderick Beijersbergen | |
| coffee break | |||
| 11.10 - 12.00 | Protein structure and drug design | Titia Sixma | |
| 12.10 - 13.00 | Protein structure and drug design | Titia Sixma | |
| preparation research proposal | |||
| DATE / TIME | SUBJECT | TEACHER | |
| TUESDAY | 25/Oct | ||
| 9.00 - 9.50 | Immunology and Immunotherapy | Serena Vegna | |
| 10.00 - 10.50 | Immunology and Immunotherapy | Serena Vegna | |
| coffee break | |||
| 11.10 - 12.00 | The study of mouse models for cancer | Jos Jonkers | |
| 12.10 - 13.00 | The study of mouse models for cancer | Jos Jonkers | |
| preparation research proposal | |||
| DATE / TIME | SUBJECT | TEACHER | |
| WEDNESDAY | 26/Oct | ||
| 9.00 - 9.50 | Feedback and discussion research proposal | Roderick Beijersbergen | |
| 10.00 - 10.50 | Feedback and discussion research proposal | Roderick Beijersbergen | |
| coffee break | |||
| 11.10 - 12.00 | TCR and Neoantigens | Wouter Scheper | |
| 12.10 - 13.00 | TCR and Neoantigens | Wouter Scheper | |
| preparation research proposal | |||
| DATE / TIME | SUBJECT | TEACHER | |
| THURSDAY | 27/Oct | ||
| 9.00 - 9.50 | CART-T therapy | Maria Themeli AUMC | |
| 10.00 - 10.50 | CART-T therapy | Maria Themeli | |
| coffee break | |||
| 11.10 - 12.00 | Immuno-therapy resistance | Daniel Peeper | |
| 12.10 - 13.00 | Immuno-therapy resistance | Daniel Peeper | |
| preparation research proposal and pitch presentation | |||
| 24.00 | Deadline for submitting slides for research proposal pitch by mail | ||
| DATE / TIME | SUBJECT | TEACHER | |
| FRIDAY | 28/Oct | ||
| 9.00 - 9.50 | proposal pitches | Roderick Beijersbergen | |
| 10.00 - 10.50 | |||
| coffee break | |||
| 11.10 - 12.00 | proposal pitches | ||
| 12.10 - 13.00 | |||
| lunch break | |||
| 13.30 - 14.20 | proposal pitches | ||
| 14.30 - 15.20 | |||
| 15.30 - 16.20 | Evaluation and Borrel | ||
| SUNDAY | 30/Oct | ||
| 24.00 | Deadline for submitting research proposal by mail | ||
Course will be held at the NKI-AVL, Plesmanlaan 121, Amsterdam
For information, contact mw. Patty Lagerweij (p.lagerweij@nki.nl)
Homepage NKI-AVL: http://www.nki.nl